Data and portals

https://portal.bluebrain.epfl.ch - The main data portal containing neuron and synapse models

https://bbp.epfl.ch/nmc-portal/downloads - Download the predicted rat local connectome

http://channelpedia.epfl.ch - Ion channel models and tons of data on ion channel kinetics

https://portal.bluebrain.epfl.ch/resources/models/mouse-projections/ - Predicted mouse connectome, comprising local and long-range connectivity

https://bbp.epfl.ch/nexus/cell-atlas - an atlas of the predicted whole-brain composition of adult mouse

https://reimann.science/2021/01/07/rat-somatosensory-cortex-connectivity/ - A neat visualization of our predicted rat connectome. Play around with it!

Code and programs

https://github.com/BlueBrain/BluePyOpt - General optimization framework. Used for building single cell electrical models

https://github.com/BlueBrain/insilico-vsdi - Used for calculating the VSDI signal from simulation results

https://github.com/BlueBrain/topological_sampling - Analysis code related to the Reimann et al., 2020 paper on spike coding. The raw data of that publication can be found at https://zenodo.org/record/4317336

https://github.com/MWolfR/targeting_specificity_test - A quick analysis showing the importance of statistical dependence when selecting synapses as a subset of potential synapses